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Results

Example run

We executed the following commands do perform a WtP test-run from the Terminal-section:

nextflow run phage.nf -profile smalltest,local,docker --work-dir --cores 16

WtP will create a results-folder in your current working dir (where you executed WtP) and a subfolder with the name of your input-fasta - in our case all_pos_phage

Results

literature

  • contains a Citations.bib file which you can import the in your citation program to have all the citations of the programs WtP uses for its analysis

run info

execution_report.html:

  • this report gives an overview over:
  • distribution of resource usage for each process (CPU, Memory, Job duration)
  • information about each task in the workflow

execution_timeline.html:

  • this report gives you an overview over the processes execution timeline

Test sample result

A testreport for a larger dataset can be found here

raw_data

  • contains the raw output from the phage-identification-tools packed as toolname.tar.gz -file

sample_overview-small.html, sample_overview-large.html

chromomap results
chromomap results

The graphical output of the annotation shows an overview of the individual loci of the predicted ORFs and the corresponding genes in the fasta sequences identified as phages. For a better visibility, we have chosen 4 categories: tail, capsid, baseplate, and other. This output can be used to verify the identified sequences (if the predicted sequences make sense or not). The annotation results are additionally plotted in an interactive HTML-file and are available as a file for further analysis.